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Simulation report

Technical information

General information

Name: Beta arrestin 1 - loop flexibility in solution

PDB id: 6U1N

Activation state: Active

Description: -

Submitted by: Tomasz Stepniewski, IMIM

System setup

Solvent type: Implicit

Membrane type: Implicit

Ionic composition: Sodium ion (157 mM), Chloride (159 mM)

Number of molecules:

Water: 52356

Chloride: 150

Sodium ion: 148

Beta-arrestin-1: 1

Total number of atoms: 163184

Simulation details

Software and version: Acemd, 3.3

Forcefield and version: Charmm, 36M

Time step : 4.0 fs

Delta : 1.0 ns

Replicates: 1

Accumulated simulation time: 1.5 µs

Additonal parameters: Available at "Simulation protocol & starting files"

References

None. None. Location-biased β-arrestin conformations direct G protein-coupled receptor signa. None. doi: spatiotemporalsignaling.



Find a list of all simulations published in this paper: 1526

Simulation components

Ligands

Peptidic ligand(s)

Beta-arrestin-1

(1 molecule)

Receptor

PDB id: 6U1N

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Open with GPCRmd Workbench

Mutations

No mutations found



Other molecules



Sodium ion

Specific State ID: 5153

(148 molecules)

Na+


Chloride

Specific State ID: 5154

(150 molecules)

Cl-


Water

Specific State ID: 5151

(52356 molecules)

H2O


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